ULP2 / YIL031W Overview
- Standard Name
- ULP2 1
- Systematic Name
- YIL031W
- SGD ID
- SGD:S000001293
- Aliases
- SMT4 7
- Feature Type
- ORF , Verified
- Description
- Peptidase that deconjugates Smt3/SUMO-1 peptides from proteins; plays a role in chromosome cohesion at centromeric regions, recovery from checkpoint arrest induced by DNA damage or DNA replication defect, and RNA splicing; potential Cdc28p substrate; human homolog PML implicated in promyelocytic leukemia can partially complement yeast null mutant 1 2 3 4 5 6
- Name Description
- UbL-specific Protease 1
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Length (a.a.)
- 1034
- Mol. Weight (Da)
- 116875.8
- Isoelectric Point
- 6.83
- Median Abundance (molecules/cell)
- 454 +/- 235
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all ULP2 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- SUMO protease involved in compaction of dispersed interphase chromatin into chromosomes, mitotic cell cycle spindle assembly checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled with chromosomes attached, and maintenance of the integrity of extrachromosomal plasmid DNA
View computational annotations
Molecular Function
- Manually Curated
- enables cysteine-type peptidase activity (IDA)
- enables deSUMOylase activity (IMP, IDA)
- enables transcription elongation factor activity (IDA)
Biological Process
- Manually Curated
- involved in chromosome condensation (IMP)
- involved in mitotic spindle assembly checkpoint signaling (IMP)
- involved in plasmid maintenance (IMP)
- involved in protein desumoylation (IDA, IMP)
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
- Summary
- Non-essential gene; null mutant is extremely slow-growing and displays enlarged cells with elongated buds and abnormal spindles, irregularly shaped colonies, higher rates of chromosome loss, and sensitivity to UV, gamma rays, heat, MMS, and HU; conditional allele confers resistance to doxorubicin; in large-scale studies, null mutant scored as inviable; repression confers lowered competitive fitness; diploid heterozygous null mutant has lower innate thermotolerance and sensitivity to myriocin
Classical Genetics
- null
- aneuploidy: increased
- cellular morphology: abnormal
- chromosome/plasmid maintenance: decreased
- colony appearance: abnormal
- gamma ray resistance: decreased
- growth in exponential phase: decreased rate
- heat sensitivity: increased
- protein/peptide distribution: abnormal
- protein/peptide modification: increased
- resistance to chemicals: decreased
- resistance to chemicals: increased
- RNA accumulation: increased
- spindle morphology: abnormal
- sporulation: decreased
- UV resistance: decreased
- vegetative growth: decreased
- viable
- conditional
- reduction of function
- null
- reduction of function
- overexpression
- conditional
Large-scale Survey
Disease
Disease Annotations consist of three mandatory components: a gene product, a term from the Disease Ontology (DO) controlled vocabulary and an evidence code. SGD provides manually curated DO Annotations derived from the literature. Click "Disease Details" to view all Disease information and evidence for this locus as well as diseases it shares with other genes.
- Summary
- Yeast ULP2 is homologous to human PML, and has been used to study acute promyelocytic leukemia
Manually Curated
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
490 total interactions for 357 unique genes
Physical Interactions
- Affinity Capture-MS: 227
- Affinity Capture-RNA: 4
- Affinity Capture-Western: 6
- Biochemical Activity: 6
- Co-crystal Structure: 3
- Co-localization: 1
- Co-purification: 5
- PCA: 91
- Protein-peptide: 2
- Reconstituted Complex: 10
- Two-hybrid: 7
Genetic Interactions
- Dosage Growth Defect: 3
- Dosage Lethality: 1
- Dosage Rescue: 17
- Phenotypic Enhancement: 5
- Phenotypic Suppression: 27
- Synthetic Growth Defect: 15
- Synthetic Lethality: 17
- Synthetic Rescue: 43
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.