HRQ1 / YDR291W Overview
- Standard Name
- HRQ1 1
- Systematic Name
- YDR291W
- SGD ID
- SGD:S000002699
- Feature Type
- ORF , Verified
- Description
- 3'-5' DNA helicase of the conserved RecQ family; involved in Pso2p-mediated interstrand crosslink repair; acts with Rad4p in nucleotide-excision repair; binds telomeres, modulates telomerase activity with Pif1p and inhibits telomere addition to dsDNA breaks; role in telomerase-independent telomere maintenance; lacks ssDNA annealing and strand exchange activities; human RecQL4, a structural and functional homolog, is involved in Rothmund-Thomson, Baller-Gerold and RAPADILINO syndromes 1 2 3 4 5 6 7 8
- Name Description
- Homologous to RecQ protein 1
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Length (a.a.)
- 1077
- Mol. Weight (Da)
- 123536.9
- Isoelectric Point
- 6.65
- Median Abundance (molecules/cell)
- 727 +/- 438
- Half-life (hr)
- 13.4
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all HRQ1 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- 3'-5' DNA helicase activity involved in DNA duplex unwinding and DNA strand renaturation; has role in nucleotide-excision repair, interstrand cross-link repair, and positive regulation of nuclease activity
View computational annotations
Molecular Function
- Manually Curated
- enables 3'-5' DNA helicase activity (IDA)
- enables enzyme activator activity (IDA)
- enables single-stranded DNA binding (IDA)
- enables telomeric DNA binding (IDA)
- enables zinc ion binding (RCA)
Biological Process
- Manually Curated
- involved in DNA duplex unwinding (IDA)
- acts upstream of or within error-free postreplication DNA repair (IMP)
- involved in interstrand cross-link repair (IDA)
- involved in nucleotide-excision repair (IGI, IPI)
- acts upstream of or within positive regulation of nuclease activity (IDA, IMP)
- involved in regulation of telomere maintenance (IGI)
- involved in telomere assembly (IMP)
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
Classical Genetics
- null
- chemical compound accumulation: abnormal
- competitive fitness: increased
- haploinsufficient
- haploproficient
- replicative lifespan: increased
- resistance to chemicals: decreased
- resistance to chemicals: increased
- utilization of carbon source: decreased rate
- utilization of nitrogen source: decreased rate
- viable
Large-scale Survey
Disease
Disease Annotations consist of three mandatory components: a gene product, a term from the Disease Ontology (DO) controlled vocabulary and an evidence code. SGD provides manually curated DO Annotations derived from the literature. Click "Disease Details" to view all Disease information and evidence for this locus as well as diseases it shares with other genes.
- Summary
- Yeast HRQ1 is homologous to human RECQL4, and has been used to study Rothmund-Thomson, Baller-Gerold, and rapadilino syndromes, as well as overexpression of RECQL4 in breast cancer
Manually Curated
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
2523 total interactions for 2121 unique genes
Physical Interactions
- Affinity Capture-MS: 82
- Affinity Capture-RNA: 4
- Co-fractionation: 1
- Reconstituted Complex: 1
- Two-hybrid: 1
Genetic Interactions
- Negative Genetic: 1192
- Phenotypic Enhancement: 6
- Phenotypic Suppression: 2
- Positive Genetic: 1216
- Synthetic Growth Defect: 13
- Synthetic Lethality: 2
- Synthetic Rescue: 3
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
No regulation data available.
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.