YUR1 / YJL139C Overview
- Standard Name
- YUR1 1
- Systematic Name
- YJL139C
- SGD ID
- SGD:S000003675
- Feature Type
- ORF , Verified
- Description
- Mannosyltransferase involved in protein N-glycosylation; member of the KTR1 family; located in the Golgi apparatus; YUR1 has a paralog, KTR2, that arose from the whole genome duplication 1 2 3 4
- Name Description
- Yeast Unknown Reading frame 5
- Paralog
- KTR2 4
- Comparative Info
-
Sequence
The S. cerevisiae Reference Genome sequence is derived from laboratory strain S288C. Download DNA or protein sequence, view genomic context and coordinates. Click "Sequence Details" to view all sequence information for this locus, including that for other strains.
- Summary
- YUR1 has a paralog, KTR2, that arose from the whole genome duplication
Analyze Sequence
S288C only
BLASTN | BLASTP | Design Primers | Restriction Fragment Map | Restriction Fragment Sizes | Six-Frame Translation
S288C vs. other species
BLASTN vs. fungi | BLASTP at NCBI | BLASTP vs. fungi
S288C vs. other strains
Protein
Basic sequence-derived (length, molecular weight, isoelectric point) and experimentally-determined (median abundance, median absolute deviation) protein information. Click "Protein Details" for further information about the protein such as half-life, abundance, domains, domains shared with other proteins, protein sequence retrieval for various strains, physico-chemical properties, protein modification sites, and external identifiers for the protein.
- Length (a.a.)
- 428
- Mol. Weight (Da)
- 50820.4
- Isoelectric Point
- 4.92
- Median Abundance (molecules/cell)
- 707 +/- 55
- Half-life (hr)
- 6.1
Alleles
Curated mutant alleles for the specified gene, listed alphabetically. Click on the allele name to open the allele page. Click "SGD search" to view all alleles in search results.
View all YUR1 alleles in SGD search
Gene Ontology
GO Annotations consist of four mandatory components: a gene product, a term from one of the three Gene Ontology (GO) controlled vocabularies (Molecular Function, Biological Process, and Cellular Component), a reference, and an evidence code. SGD has manually curated and high-throughput GO Annotations, both derived from the literature, as well as computational, or predicted, annotations. Click "Gene Ontology Details" to view all GO information and evidence for this locus as well as biological processes it shares with other genes.
- Summary
- Mannosyltransferase involved in protein amino acid N-linked glycosylation and cell wall mannoprotein biosynthesis; localizes to Golgi apparatus and endoplasmic reticulum
View computational annotations
Molecular Function
- Manually Curated
- enables mannosyltransferase activity (IDA)
Biological Process
- Manually Curated
- involved in cell wall mannoprotein biosynthetic process (IMP)
- involved in protein N-linked glycosylation (IMP)
Cellular Component
- Manually Curated
- located in endoplasmic reticulum (HDA)
- located in Golgi apparatus (IDA)
Phenotype
Phenotype annotations for a gene are curated single mutant phenotypes that require an observable (e.g., "cell shape"), a qualifier (e.g., "abnormal"), a mutant type (e.g., null), strain background, and a reference. In addition, annotations are classified as classical genetics or high-throughput (e.g., large scale survey, systematic mutation set). Whenever possible, allele information and additional details are provided. Click "Phenotype Details" to view all phenotype annotations and evidence for this locus as well as phenotypes it shares with other genes.
- Summary
- Non-essential gene; null mutants grow slowly, have increased lifespan, decreased competitive fitness, are defective in vacuolar fragmentation, resistant to phosphatidylinositol 3-kinase inhibitor wortmannin and K28 killer toxin, sensitive to immunosuppressive agent tacrolimus, TOR inhibitor rapamycin, and antimicrobial paromomycin; homozygous diploid null mutants show decreased comptitive fitness, are resistant to antineoplastic topoisomerase inhibitor topotecan, experimental anticancer drug tirapazamine, and nitrogen mustard mechlorethamine, but sensitive to protein kinase C inhibitor staurosporine, antimicrobials hygromycin B and actinomycin D; heterozygous diploid nulls are haploinsufficient; overexpression slows growth
Classical Genetics
- null
- chronological lifespan: decreased
- competitive fitness: decreased
- endocytosis: decreased
- haploinsufficient
- killer toxin resistance: increased
- protein activity: increased
- protein/peptide distribution: abnormal
- replicative lifespan: increased
- resistance to chemicals: decreased
- resistance to chemicals: increased
- sporulation: abnormal
- vacuolar morphology: abnormal
- vegetative growth: decreased rate
- viable
- overexpression
Large-scale Survey
Interaction
Interaction annotations are curated by BioGRID and include physical or genetic interactions observed between at least two genes. An interaction annotation is composed of the interaction type, name of the interactor, assay type (e.g., Two-Hybrid), annotation type (e.g., manual or high-throughput), and a reference, as well as other experimental details. Click "Interaction Details" to view all interaction annotations and evidence for this locus, including an interaction visualization.
- Summary
- The yur1 null mutant is viable; the null mutant of paralog ktr2 is viable; the yur1 ktr2 double mutant displays negative genetic interactions.
230 total interactions for 158 unique genes
Physical Interactions
- Affinity Capture-MS: 1
- Affinity Capture-RNA: 4
- Co-localization: 1
- Two-hybrid: 1
Genetic Interactions
- Negative Genetic: 168
- Phenotypic Enhancement: 12
- Phenotypic Suppression: 6
- Positive Genetic: 23
- Synthetic Growth Defect: 8
- Synthetic Lethality: 5
- Synthetic Rescue: 1
Regulation
The number of putative Regulators (genes that regulate it) and Targets (genes it regulates) for the given locus, based on experimental evidence. This evidence includes data generated through high-throughput techniques. Click "Regulation Details" to view all regulation annotations, shared GO enrichment among regulation Targets, and a regulator/target diagram for the locus.
- Regulators
- 1
- Targets
- 0
Expression
Expression data are derived from records contained in the Gene Expression Omnibus (GEO), and are first log2 transformed and normalized. Referenced datasets may contain one or more condition(s), and as a result there may be a greater number of conditions than datasets represented in a single clickable histogram bar. The histogram division at 0.0 separates the down-regulated (green) conditions and datasets from those that are up-regulated (red). Click "Expression Details" to view all expression annotations and details for this locus, including a visualization of genes that share a similar expression pattern.
Literature
All manually curated literature for the specified gene, organized into topics according to their relevance to the gene (Primary Literature, Additional Literature, or Review). Click "Literature Details" to view all literature information for this locus, including shared literature between genes.